DEprot.enrichResult class

DEprot.enrichResult class

Slots

enrichment.discovery

the direct output from clusterProfiler::GSEA or clusterProfiler::enricher (GSEA and ORA, respectively). Class: "ANY".

protein.network

a string plot showing protein networks (clusterProfiler::cnetplot). Class: "ANY".

pathway.network

a list with clusters and string plot showing pathway/set networks (aPEAR::enrichmentNetwork). Class: "ANY".

NES.plot

(GSEA only) a bar plot showing the NES scores for each significantly enriched geneSet. Class: "ANY".

dotplot_gene.ratio

a dotplot showing the geneRatios for each significantly enriched geneSet. Class: "ANY".

dotplot_fold.enrichment

(ORA only) a dotplot showing the foldEnrichment for each significantly enriched geneSet. Class: "ANY".

parameters

a list containing the parameters used to run the analyses. Class: "ANY".

affinity.propagation

results of representative elements for each geneset.