Function that allows for removing or keeping specific proteins from any DEprot object class.
# S3 method for class 'proteins'
filter(DEprot.object, proteins, mode = "keep")Object of class DEprot.
String vector indicating a list of proteins to be use as filtering criteria. It must correspond to the counts rown names and 'prot.id' column of the analyses object.
String indicating the mode to use for the filtering. If 'keep' the proteins are selected and kept, while if 'remove' the proteins are discarded. Default: "keep".
An object of class DEprot (S4 vector).
# Remove a subset of proteins
dpo <- filter.proteins(DEprot.object = DEprot::test.toolbox$dpo.raw,
proteins = c("protein.29","protein.30"),
mode = "remove")
# Retain a subset of proteins
dpo <- filter.proteins(DEprot.object = DEprot::test.toolbox$dpo.raw,
proteins = c("protein.29","protein.30"),
mode = "keep")