Function to extract the metadata from a DEprot object.
get.metadata(DEprot.object)Data.frame corresponding to the metadata of the provided object.
# Extract metadata for DEprot oeejct
get.metadata(DEprot::dpo.imputed.counts)
#> column.id sample.id cell condition combined.id
#> 1 BCa_FBS_rep1 BCa_FBS_rep1 BCa FBS BCa_FBS
#> 2 BCa_6h.DMSO_rep1 BCa_6h.DMSO_rep1 BCa 6h.DMSO BCa_6h.DMSO
#> 3 BCa_6h.10nM.E2_rep1 BCa_6h.10nM.E2_rep1 BCa 6h.10nM.E2 BCa_6h.10nM.E2
#> 4 BCa_FBS_rep2 BCa_FBS_rep2 BCa FBS BCa_FBS
#> 5 BCa_6h.DMSO_rep2 BCa_6h.DMSO_rep2 BCa 6h.DMSO BCa_6h.DMSO
#> 6 BCa_6h.10nM.E2_rep2 BCa_6h.10nM.E2_rep2 BCa 6h.10nM.E2 BCa_6h.10nM.E2
#> 7 BCa_FBS_rep3 BCa_FBS_rep3 BCa FBS BCa_FBS
#> 8 BCa_6h.DMSO_rep3 BCa_6h.DMSO_rep3 BCa 6h.DMSO BCa_6h.DMSO
#> 9 BCa_6h.10nM.E2_rep3 BCa_6h.10nM.E2_rep3 BCa 6h.10nM.E2 BCa_6h.10nM.E2
#> 10 BCa_FBS_rep4 BCa_FBS_rep4 BCa FBS BCa_FBS
#> 11 BCa_6h.DMSO_rep4 BCa_6h.DMSO_rep4 BCa 6h.DMSO BCa_6h.DMSO
#> 12 BCa_6h.10nM.E2_rep4 BCa_6h.10nM.E2_rep4 BCa 6h.10nM.E2 BCa_6h.10nM.E2
#> replicate old.column.id
#> 1 rep1 Sample_A
#> 2 rep1 Sample_B
#> 3 rep1 Sample_C
#> 4 rep2 Sample_D
#> 5 rep2 Sample_E
#> 6 rep2 Sample_F
#> 7 rep3 Sample_G
#> 8 rep3 Sample_H
#> 9 rep3 Sample_I
#> 10 rep4 Sample_J
#> 11 rep4 Sample_K
#> 12 rep4 Sample_L
# Extract metadata for DEprot object
get.metadata(DEprot::test.toolbox$diff.exp.limma)
#> column.id sample.id cell condition combined.id replicate
#> 1 Sample_A BCa_FBS_rep1 BCa FBS BCa_FBS rep1
#> 2 Sample_B BCa_6h.DMSO_rep1 BCa 6h.DMSO BCa_6h.DMSO rep1
#> 3 Sample_C BCa_6h.10nM.E2_rep1 BCa 6h.10nM.E2 BCa_6h.10nM.E2 rep1
#> 4 Sample_D BCa_FBS_rep2 BCa FBS BCa_FBS rep2
#> 5 Sample_E BCa_6h.DMSO_rep2 BCa 6h.DMSO BCa_6h.DMSO rep2
#> 6 Sample_F BCa_6h.10nM.E2_rep2 BCa 6h.10nM.E2 BCa_6h.10nM.E2 rep2
#> 7 Sample_G BCa_FBS_rep3 BCa FBS BCa_FBS rep3
#> 8 Sample_H BCa_6h.DMSO_rep3 BCa 6h.DMSO BCa_6h.DMSO rep3
#> 9 Sample_I BCa_6h.10nM.E2_rep3 BCa 6h.10nM.E2 BCa_6h.10nM.E2 rep3
#> 10 Sample_J BCa_FBS_rep4 BCa FBS BCa_FBS rep4
#> 11 Sample_K BCa_6h.DMSO_rep4 BCa 6h.DMSO BCa_6h.DMSO rep4
#> 12 Sample_L BCa_6h.10nM.E2_rep4 BCa 6h.10nM.E2 BCa_6h.10nM.E2 rep4