get.stats

Extract statistics and degrees of freedom from a DiffBind object (class DBA).

get.stats(
  dba.object,
  contrast,
  design,
  diff.method = "DESeq2",
  p.adjust.method = "BH"
)

Arguments

dba.object

An object of class DBA obtained from DiffBind.

contrast

Vector of 3-elements indicating (in order): metadata_column, group_1, group_2.

design

String indicating the design to use in the differential analyses.

diff.method

String indicating which tool to use to perform differential analyses. One among: 'DESeq2' and 'edgeR'. Default: "DESeq2".

p.adjust.method

String indicating the method to use to correct the p-values. One among: "holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none". Default: BH.

Value

An object of class power4omics.stats.