endometrium metadata table for dba object preparation — endometrium

Metadata table for differential analyses of ERa ChIP-seq data performed in normal and tumor endometrium from human patients, Gregoricchio et al. (Genome Biology, 2025).

endometrium_metadata

Format

data.frame (8 rows x 5 columns)

SampleID: id assigned to each sample, H stands for 'healthy' while T for 'tumor'
Tissue: tissue from which the samples derive
Factor: The factor for which the ChIP was performed, in this case estrogen receptor alpha (ERa)
Treatment: treatment applied to the cells or patients, in this case none, equivalent ot the 'Condition' column
Condition: condition applied to the cells or patients, in this case none, equivalent ot the 'Treatment' column
Replicate: id of the biological replicate, in this case each tissue is considered as an indipendent biological replicate

Source

EGAS00001007240 and GSE253900.

References

Gregoricchio et al. (Genome Biology, 2025) doi:10.1186/s13059-025-03596-5