DEprot ![](https://sebastian-gregoricchio.github.io/DEprot/DEprot_logo.png)
R package to impute, normalize and perform differential analyses on proteomics data (LFQ-based)
Introduction
The concept behind DEprot
(Differential Expression proteomics) is to provide a toolkit that allows for the normalization, imputation and analyses of the differential protein expression in proteomics data. The data are assumed to be LFQ (label-free quantitation) values or MS-counts.
Citation
If you use this package, please cite:
Installation
## Install devtools from CRAN (if not installed)
# install.packages("devtools")
## Or the development version from GitHub:
# install.packages("devtools")
# devtools::install_github("r-lib/devtools")
# Install the DEprot package
devtools::install_github("sebastian-gregoricchio/DEprot",
build_manual = TRUE,
build_vignettes = TRUE)
Documentation
With the package a web-manual and a vignette are available.
The vignette can be inspected on R as well by typing browseVignettes("DEprot")
.
Package history and releases
A list of all releases and respective description of changes applied could be found here.
Contact
For any suggestion, bug fixing, commentary please report it in the issues/request tab of this repository.
License
This package is under a GNU General Public License (version 3).