DEprot

R package to impute, normalize and perform differential analyses on proteomics data (LFQ-based)

Introduction

The concept behind DEprot (Differential Expression proteomics) is to provide a toolkit that allows for the normalization, imputation and analyses of the differential protein expression in proteomics data. The data are assumed to be LFQ (label-free quantitation) values or MS-counts.

Citation

If you use this package, please cite:

*No publication associated yet.*

Installation

## Install devtools from CRAN (if not installed)
# install.packages("devtools")

## Or the development version from GitHub:
# install.packages("devtools")
# devtools::install_github("r-lib/devtools")

# Install the DEprot package
devtools::install_github("sebastian-gregoricchio/DEprot",
                         build_manual = TRUE,
                         build_vignettes = TRUE)

Documentation

With the package a web-manual and a vignette are available. The vignette can be inspected on R as well by typing browseVignettes("DEprot").

Package history and releases

A list of all releases and respective description of changes applied could be found here.

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Contact

For any suggestion, bug fixing, commentary please report it in the issues/request tab of this repository.

License

This package is under a GNU General Public License (version 3).

Contributors