Recomputes the ranking of the proteins, globally and within each cluster, without refitting the model (analogous to reapply.thresholds for the differential analyses).
rank.timecourse(DEprot.timecourse.object, rank.by = "score")An object of class DEprot.timecourse.
String indicating the metric used for the ranking. One among: 'score' (amplitude * -log10(padj)), 'membership' (c-means only), 'amplitude', 'padj', or 't.half' (time to half-maximum: the fastest proteins come first, which orders the proteins by WHEN they respond rather than by how much). Default: "score".
The same object, with updated rank.overall and rank.in.cluster columns.