Reference

All functions
DEprot.PCA	DEprot.PCA class
DEprot	DEprot class
DEprot.analyses	DEprot.analyses class
DEprot.contrast.heatmap	DEprot.contrast.heatmap class
DEprot.correlation	DEprot.correlation class
DEprot.counts.heatmap	DEprot.counts.heatmap class
DEprot.enrichResult	DEprot.enrichResult class
DEprot.upset	DEprot.upset class
corum_v4.1	CORUM version 4.1
corum_v5.0	CORUM version 5.0
diff(<analyses>)	diff.analyses
diff(<analyses.limma>)	diff.analyses.limma
filter.proteins()	filter.proteins
geneset.enrichment()	geneset.enrichment
get.metadata()	get.metadata
get.results()	get.results
harmonize.batches()	harmonize.batches
heatmap.contrasts()	heatmap.contrasts
heatmap.counts()	heatmap.counts
impute.counts()	impute.counts
load.counts()	load.counts
normalize.counts()	normalize.counts
perform.PCA()	perform.PCA
plot(<MA>)	plot.MA
plot(<PC.cumulative>)	plot.PC.cumulative
plot(<PC.scatter.123>)	plot.PC.scatter.123
plot(<PC.scatter>)	plot.PC.scatter
plot(<correlation.heatmap>)	plot.correlation.heatmap
plot(<counts>)	plot.counts
plot(<upset>)	plot.upset
plot(<volcano>)	plot.volcano
protein.summary()	protein.summary
rename.samples()	rename.samples
sample.config	Example of metadata table
show(<DEprot>)	DEprot show-method
show(<DEprot.PCA>)	DEprot.PCA show-method
show(<DEprot.analyses>)	DEprot.analyses show-method
show(<DEprot.contrast.heatmap>)	DEprot.cluster.heatmap show-method
show(<DEprot.correlation>)	DEprot.correlation show-method
show(<DEprot.counts.heatmap>)	DEprot.counts.heatmap show-method
show(<DEprot.enrichResult>)	DEprot.enrichResult show-method
show(<DEprot.upset>)	DEprot.upset show-method
summary(<DEprot.analyses>)	DEprot.analyses summary-method
unimputed.counts	Unimputed proteomics (LFQ) data