Reference

All functions
DEprot.PCA	DEprot.PCA class
DEprot	DEprot class
DEprot.analyses	DEprot.analyses class
DEprot.contrast.heatmap	DEprot.contrast.heatmap class
DEprot.correlation	DEprot.correlation class
DEprot.counts.heatmap	DEprot.counts.heatmap class
DEprot.enrichResult	DEprot.enrichResult class
DEprot.normality	DEprot.normality class
DEprot.pvalues	DEprot.pvalues class
DEprot.upset	DEprot.upset class
check.normality()	check.normality
check.pvalues()	check.pvalues
compare.ranking()	compare.ranking
contrast.scatter()	contrast.scatter
corum_v4.1	CORUM version 4.1
corum_v5.0	CORUM version 5.0
diff(<analyses>)	diff.analyses
diff(<analyses.limma>)	diff.analyses.limma
export.analyses()	export.analyses
expression.boxplot()	expression.boxplot
filter(<proteins>)	filter.proteins
geneset.enrichment()	geneset.enrichment
get.metadata()	get.metadata
get.results()	get.results
harmonize.batches()	harmonize.batches
heatmap.contrasts()	heatmap.contrasts
heatmap.counts()	heatmap.counts
impute.counts()	impute.counts
load.counts()	load.counts
normalize.counts()	normalize.counts
perform.PCA()	perform.PCA
plot(<MA>)	plot.MA
plot(<PC.cumulative>)	plot.PC.cumulative
plot(<PC.scatter.123>)	plot.PC.scatter.123
plot(<PC.scatter>)	plot.PC.scatter
plot(<correlation.heatmap>)	plot.correlation.heatmap
plot(<counts>)	plot.counts
plot(<upset>)	plot.upset
plot(<volcano>)	plot.volcano
protein.summary()	protein.summary
randomize.missing.values()	randomize.missing.values
reapply.thresholds()	reapply.thresholds
rename(<samples>)	rename.samples
sample.config	Example of metadata table
show(<DEprot>)	DEprot show-method
show(<DEprot.PCA>)	DEprot.PCA show-method
show(<DEprot.analyses>)	DEprot.analyses show-method
show(<DEprot.contrast.heatmap>)	DEprot.cluster.heatmap show-method
show(<DEprot.correlation>)	DEprot.correlation show-method
show(<DEprot.counts.heatmap>)	DEprot.counts.heatmap show-method
show(<DEprot.enrichResult>)	DEprot.enrichResult show-method
show(<DEprot.normality>)	DEprot.normality show-method
show(<DEprot.pvalues>)	DEprot.pvalues show-method
show(<DEprot.upset>)	DEprot.upset show-method
summary(<DEprot.analyses>)	DEprot.analyses summary-method
unimputed.counts	Unimputed proteomics (LFQ) data