DEprot.PCA class
PCA.metadata
:metadata of the samples used in the PCA (subset of the original DEprot@metadata
. Class: "ANY"
.
sample.subset
:vector containing the list of samples analyzed. Class: "ANY"
.
data.used
:vector indicating the type of counts used (imputed, normalized, raw). Class: "ANY"
.
prcomp
:object of class prcomp
(or output from pcaMethods::pca
, method = "nipals") corresponding to the full PCA output. Class: "ANY"
.
PCs
:data.frame combining the PC scores and the metadata table, useful for replotting. Class: "ANY"
.
importance
:statistical summary table for the PCA analyses per each PC. Class: "ANY"
.
cumulative.PC.plot
:ggplot object corresponding to out put of plot.PC.cumulative
for this object. Class: "ANY"
.