remove.undetected.proteins

This function allows for the removal of all the proteins that occur below a certain threshold (detected in at least n samples).

remove.undetected.proteins(
  DEprot.object,
  min.n.samples = 3,
  which.data = "normalized"
)

Arguments

DEprot.object

A DEprot object.

min.n.samples

Numeric value indicating the minimum number of sample in which a protein must be detected to be kept. Default: 3.

which.data

String indicating which type of counts should be used to define the proteins to remove. One among: 'raw', 'normalized', 'norm', 'imputed', 'imp'. Default: "normalized".

Value

A DEprot object.