DEprot.enrichResult class

Slots

enrichment.discovery:: the direct output from clusterProfiler::GSEA or clusterProfiler::enricher (GSEA and ORA, respectively). Class: "ANY".
protein.network:: a string plot showing protein networks (clusterProfiler::cnetplot). Class: "ANY".
pathway.network:: a list with clusters and string plot showing pathway/set networks (aPEAR::enrichmentNetwork). Class: "ANY".
NES.plot:: (GSEA only) a bar plot showing the NES scores for each significantly enriched geneSet. Class: "ANY".
dotplot_gene.ratio:: a dotplot showing the geneRatios for each significantly enriched geneSet. Class: "ANY".
dotplot_fold.enrichment:: (ORA only) a dotplot showing the foldEnrichment for each significantly enriched geneSet. Class: "ANY".
parameters:: a list containing the parameters used to run the analyses. Class: "ANY".