The function uses the package HarmonizR to correct batch effects in a combined table of multiple experiments.
harmonize.batches(DEprot.object, batch.column = "batch", cores = 1)A DEprot object, as generated by load.counts. Notice that this function works only with "normalized".
String indicating the name of a column from the metadata table in which are stored the replicate IDs. This column is used only if paired.test = TRUE. Default: NULL.
Numeric value indicating the number of cores to use for the batch correction. Default: 1.