DEprot class

DEprot class

Slots

metadata:

The data.frame corresponding to the metadata table describing the samples. Class: "ANY".

raw.counts:

Numeric matrix (rows: proteins, columns: samples) of the raw counts. Class: "ANY".

norm.counts:

Numeric matrix (rows: proteins, columns: samples) of the normalized counts. Class: "ANY".

imputed.counts:

Numeric matrix (rows: proteins, columns: samples) of the imputed counts. Class: "ANY".

log.base:

Numeric value indicating the base of the logarithm expressing the values in the loaded data. Class: "ANY".

log.transformed:

Logical value indicating whether the data are log-transformed or not. Class: "logical".

imputed:

Logical value indicating whether the data are imputed. Class: "logical".

imputation:

String (or any other class) value indicating the imputation method. Class: "ANY".

normalized:

Logical value indicating whether the data are normalized. Class: "logical".

normalization.method:

String (or any other class) value indicating the normalization method. Class: "ANY". Class: "ANY".

boxplot.raw:

Ggplot object showing the distribution of the raw values per sample. Class: "ANY".

boxplot.norm:

Ggplot object showing the distribution of the normalized values per sample. Class: "ANY".

boxplot.imputed:

Ggplot object showing the distribution of the imputed values per sample. Class: "ANY".

analyses.result.list:

For this type of object the value is NULL. Class: "ANY".

contrasts:

For this type of object the value is NULL. Class: "ANY".

differential.analyses.params:

For this type of object the value is NULL. Class: "ANY".