check.pvalues — check.pvalues • DEprot

Plots a volcano plot log2(FoldChange) x -log10(p.adjusted) of differential expression results

check.pvalues(
  DEprot.analyses.object,
  contrast = 1,
  histogram.binwidth = 0.05,
  p.value.color = "steelblue",
  p.adjusted.color = "indianred"
)

Arguments

DEprot.analyses.object: An object of class DEprot.analyses.
contrast: Number indicating the position of the contrast to use for the plotting. Default: 1.
histogram.binwidth: Numeric value indicating. Default: 0.05
p.value.color: String indicating the color to use for the p-values. Default: "steelblue".
p.adjusted.color: String indicating the color to use for the p-values adjusted. Default: "indianred".

Value

A DEprot.pvalues object containing 3 slots: distribution histogram of p-values and p-values adjusted and, line plot of ranked p-values.