plot.counts — plot.counts • DEprot

Plots a volcano plot log2(FoldChange) x -log10(p.adjusted) of differential expression results

# S3 method for class 'counts'
plot(
  DEprot.object,
  which.data = "imputed",
  violin.color = "darkorange",
  max.line.color = "indianred",
  min.line.color = "steelblue",
  title = NULL,
  subtitle = NULL,
  convert.log2 = TRUE
)

Arguments

DEprot.object: An object of class DEprot.analyses.
which.data: String indicating which type of counts should be used. One among: 'raw', 'normalized', 'norm', 'imputed', 'imp'. Default: "imputed".
violin.color: String indicating the color to use for the violin plots. Default: "darkorange".
max.line.color: String indicating the color to use for up-regulated proteins in the plots. Default: "indianred".
min.line.color: String indicating the color to use for up-regulated proteins in the plots. Default: "steelblue".
title: String indicating the title to use. Default: NULL.
subtitle: String indicating the subtitle to use. Default: NULL.
convert.log2: Logical value to define whether counts should be log2 transformed. Default: TRUE.

Value

A ggplot object.