protein.summary — protein.summary • DEprot

Plots stacked-barplot recapitulating

protein.summary(
  DEprot.object,
  group.column = "column.id",
  n.lables = NULL,
  label.color = "white",
  x.label.angle = 30,
  show.frequency = FALSE,
  colors = NULL,
  title = NULL,
  subtitle = NULL
)

Arguments

DEprot.object: An object of class DEprot or DEprot.analyses.
group.column: String indicating a column among the ones in the metadata table. Default: "column.id" (no groups).
n.lables: String indicating the type of values to display on the barplot. One among: NULL (no labels), "frequency", "percentage", "counts". Default: NULL (no labels).
label.color: String indicating the font-color to use for the barplot values labels. Default: "white".
x.label.angle: Numeric value indicating the rotation angle to use for the x-axis labels. Default: 30 (degrees).
show.frequency: Logical value indicating whether the barplot should show the y-axis as frequency or as absolute counts. Default: FALSE (counts).
colors: String-vector indicating the colors to use for the degrees of protein-presence. Default: NULL (colors will be assigned automatically).
title: String indicating the title to use (markdown annotation supported). Default: NULL.
subtitle: String indicating the subtitle to use (markdown annotation supported). Default: NULL.

Value

A ggplot object.