power4omics

An R-package for power and sample size calculations for genomics data (ChIP-seq, ATAC-seq, CUT&Tag/RUN, etc.)

Introduction

Add introduction here

Citation

If you use this package, please cite:

"No publication associated yet" XYZ *et al.*, *XYZ* (20XYZ) *doi*: [none](https://doi.org/none)

Dependencies/Requirements

Some functions require SSPA, package not available anymore on Bioconductor. These can be installed from the bioconductor archive source:

# Install SSPA package from gitHub path
install.packages("https://www.bioconductor.org/packages/3.12/bioc/src/contrib/SSPA_2.30.0.tar.gz", type = "source")

Alternatively the source file is available in this repository in the directory resources.

Installation of power4omics

# Install devtools from CRAN
install.packages("devtools")

# Or the development version from GitHub:
## install.packages("devtools")
## devtools::install_github("r-lib/devtools")

# Install the Rseb package
devtools::install_github("sebastian-gregoricchio/power4omics",
                         build_manual = TRUE,
                         build_vignettes = TRUE)

Documentation

With the package a web-manual and a vignette are available. The vignette can be inspected on R as well by typing browseVignettes("power4omics").

Package history and releases

A list of all releases and respective description of changes applied could be found here.

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Contact

For any suggestion, bug fixing, commentary please report it in the issues/request tab of this repository.

License

This package is under a GNU General Public License (version 3).

Contributors